orkgnlp.clustering.bioassays.semantifier.BioassaysSemantifier

class BioassaysSemantifier(*args, **kwargs)[source]

Bases: ORKGNLPBaseService

The BioassaysSemantifier requires a clustering model, vectorizer and mapping. The required files are downloaded while initiation, if it has not happened before.

You can pass the parameter force_download=True to remove and re-download the previous downloaded service files.

Parameters:

  • service – Service name.

  • force_download – Indicates whether the required files are to be downloaded again. Defaults to False.

  • batch_size – Size of the batches used during model prediction. This argument is used by services that applies batch evaluation. Defaults to 16.

Methods

release_memory

Releases the memory of all available executors.

Attributes

SERVICE_NAME

__call__(text)[source]

Semantifies a given BioAssay’s description text.

Parameters:

text (str) – BioAssay’s text to be semantified.

Return type:

any

Returns:

Dictionary object of semantified properties, resources and labels.

release_memory()

Releases the memory of all available executors.